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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7835304_7884908_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7835304 - 7884908
Intron Length:
49605

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTCAATAATA
Flanking Amino Acid:
TLAGYMQTAAVFIMASGLLV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
87.7
28.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.9
0.67
0.7
73.1
31.9
Minor 5ss
22.7
-3.1
3.9
33.8
42.3
Minor BPS
59.4
0.29
1.9
74.77
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000660
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000633
7835077 - 7905092
70016