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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7909754_7912958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7909754 - 7912958
Intron Length:
3205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
TTATATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
MSFFRRKVKGKEQEKTT
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
AKAP10
Ensembl Gene ID:
ENSAPLG00000004170
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004285
7909732 - 7927390
17659