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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7926494_7927273_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7926494 - 7927273
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGAACTCTAACC
Flanking Amino Acid:
CEQRSEKITKL*
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89.5
0.89
0.6
87.8
22.3
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
55.5
0.15
1.7
65.92
39

Associated Gene:

Gene:
AKAP10
Ensembl Gene ID:
ENSAPLG00000004170
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004285
7909732 - 7927390
17659