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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7930399_7932148_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7930399 - 7932148
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCCGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTCGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGACAC
U12 Branch Point Sequence:
TGTGGCCTGACA
Flanking Amino Acid:
YLASGSGDTTIFLWDPATGN
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.4
55.5
44.7
Major BPS
48.1
-0.1
1.2
56.1
39.6
Major PPT
71.1
0.48
1
69.1
37
Minor 5ss
43.2
-0.7
3.1
59.8
44.9
Minor BPS
47
-0.2
2.2
63.96
42.3

Associated Gene:

Gene:
NLE1
Ensembl Gene ID:
ENSAPLG00000003941
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004055
7929651 - 7936400
6750