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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7932247_7933409_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7932247 - 7933409
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GTGGATTTGACG
Flanking Amino Acid:
ITCLCWEPLHINPECRYLAS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
86.7
0.83
0.7
80
31.9
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
48
-0.3
1.7
51.66
43.2

Associated Gene:

Gene:
NLE1
Ensembl Gene ID:
ENSAPLG00000003941
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004055
7929651 - 7936400
6750