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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7934291_7934440_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7934291 - 7934440
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GGTTCTGTCATC
Flanking Amino Acid:
KARQRYEKVRGSGPERLVSG
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
79
0.72
1
69
38.9
Major PPT
78.6
0.64
0.8
76.4
31.4
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
45.5
-0.3
2.3
59.15
40.6

Associated Gene:

Gene:
NLE1
Ensembl Gene ID:
ENSAPLG00000003941
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004055
7929651 - 7936400
6750