About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7934644_7935581_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934644 - 7935581
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTGTTTCAATT
Flanking Amino Acid:
SIKLWDGRTGKYLTALRGHV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
76.6
0.6
0.8
69
37.1
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
54.6
0.22
1.6
70.72
41.5

Associated Gene:

Gene:
NLE1
Ensembl Gene ID:
ENSAPLG00000003941
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004055
7929651 - 7936400
6750