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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7945090_7946322_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7945090 - 7946322
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTTCCATAATA
Flanking Amino Acid:
LLGKEIKILKELQHENIVAL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
74.1
0.75
1.5
83.05
30.8

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500