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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7946365_7955199_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7946365 - 7955199
Intron Length:
8835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTAAACTGAATT
Flanking Amino Acid:
ENIVALYDVQEMPNSVFLVM
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
57.7
0.32
1.7
76.16
39.8

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500