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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7955630_7956716_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7955630 - 7956716
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCATCT
Flanking Amino Acid:
NGGDLADYLQAKGTLSEDTI
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.9
0.69
0.9
77.7
40.6
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
61.9
0.45
1.8
82.4
38.9

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500