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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7958159_7959284_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7958159 - 7959284
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCTGTACT
Flanking Amino Acid:
ATLCGSPMYMAPEVIMSQHY
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.5
0.64
0.9
69.3
41.4
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
73.4
0.82
1.8
93.48
34.2

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500