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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7959786_7960100_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7959786 - 7960100
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATG
Flanking Amino Acid:
FYEKNRNLIPSIPRETSTYL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.5
39.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.5
0.73
0.9
77.9
34.4
Minor 5ss
33.4
-1.9
3.1
43.8
43.9
Minor BPS
60.1
0.18
1.6
61.99
40

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500