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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7963840_7964488_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7963840 - 7964488
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CCCTCTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTTTTCACT
Flanking Amino Acid:
SPSCRFASPPSLPDMQHIQE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78
0.63
0.7
76.5
25.6
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500