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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7964661_7965579_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7964661 - 7965579
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
CTGCTTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTGCTTACTG
Flanking Amino Acid:
VPHNISSDHSYDMPLGAAGR
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.6
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.9
0.49
0.9
66.7
34.1
Minor 5ss
37.2
-1.5
3
50.1
39
Minor BPS
51.6
-0
2.1
62.41
46.2

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500