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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7965975_7968948_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7965975 - 7968948
Intron Length:
2974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATGAT
5'SS Class:
major
3'SS Sequence:
CTTCCTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTCTCCATATCT
Flanking Amino Acid:
SRSTASGTTNRHCQPSVSPR
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71
34.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.8
0.69
0.8
77.9
29.2
Minor 5ss
27.2
-2.6
3.4
39.7
46.3
Minor BPS
57
0.3
2
76.59
45.8

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500