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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7970284_7970836_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7970284 - 7970836
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATTTTATTT
Flanking Amino Acid:
SSRPYSPSPLVGTIPEQLGH
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.7
0.6
0.9
77.2
36.9
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
55
0.23
1.6
71.47
40.5

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500