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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7974815_7975468_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7974815 - 7975468
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAGATTTTATCT
Flanking Amino Acid:
SLNTERPMDTAPAGAYGITV
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.4
0.89
0.7
81.5
35.9
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
49.8
0.06
1.6
63.59
40.9

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500