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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7976557_7977853_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7976557 - 7977853
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TAGTTGTTAAAT
Flanking Amino Acid:
PELPEETLMEREHTDTLRHL
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.6
0.67
0.9
76.3
32.4
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
53.8
0.2
2.1
73.86
42.8

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500