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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7978033_7978934_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7978033 - 7978934
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATTACTTATTT
Flanking Amino Acid:
DQISQLSKEWGQVEQLVLYM
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.7
0.71
0.8
74.1
36.3
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
60.1
0.4
1.8
76.87
39.5

Associated Gene:

Gene:
ULK2
Ensembl Gene ID:
ENSAPLG00000003309
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003455
7943698 - 7982197
38500