About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7985952_7986223_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7985952 - 7986223
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCG
5'SS Class:
major
3'SS Sequence:
CCTGTCATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTGCCTGTCATT
Flanking Amino Acid:
LAALQSDLHKCGHNAYSHEV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
62.4
42.4
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
76.5
0.6
0.9
69.6
35.3
Minor 5ss
34.5
-1.8
2.9
41.8
44.9
Minor BPS
42.8
-0.4
2.3
60.09
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002714
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018266
7985790 - 7991726
5937
ENSAPLT00000003343
7985790 - 7991726
5937
ENSAPLT00000002758
7985790 - 7991726
5937
ENSAPLT00000026106
7985790 - 7999500
13711