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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7986456_7986548_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7986456 - 7986548
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAA
U12 Branch Point Sequence:
GGTTGAGCAACC
Flanking Amino Acid:
VQPLIGAIAAGNAVVVKPSE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
57
0.18
1.3
69.4
37.7
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
38.7
-0.8
2.5
53.57
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002714
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018266
7985790 - 7991726
5937
ENSAPLT00000003343
7985790 - 7991726
5937
ENSAPLT00000002758
7985790 - 7991726
5937
ENSAPLT00000026106
7985790 - 7999500
13711