Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7987860_7987953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7987860 - 7987953

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGCTGTG

5'SS Class:

major

3'SS Sequence:

CCGCTTGCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

CTGACCTCATGC

Flanking Amino Acid:

GETDEASCFIAPTILTDVSA

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.2

67.1

44.6

Major BPS

73.5

0.58

73.6

32.5

Major PPT

67.6

0.4

0.9

64.5

36.5

Minor 5ss

40.4

-1.1

3.5

57.3

47.4

Minor BPS

-0.5

2.1

50.94

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003343

7985790 - 7991726

5937

ENSAPLT00000002758

7985790 - 7991726

5937

ENSAPLT00000031337

7986164 - 7999500

13337

ENSAPLT00000026106

7985790 - 7999500

13711

ENSAPLT00000018266

7985790 - 7991726

5937