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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7988121_7997598_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7988121 - 7997598
Intron Length:
9478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
CATTTTGGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATCTCTCATTT
Flanking Amino Acid:
ALYVFSNDKKLIKRVISETS
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
70.8
0.47
1
69.5
41.3
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
47
-0.1
1.8
62.34
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002714
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026106
7985790 - 7999500
13711