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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7989744_7991156_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7989744 - 7991156
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGCTTTCACA
Flanking Amino Acid:
LGVVAAVVIKMAY*
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
84.6
0.78
0.8
79.7
32.4
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
65
0.46
1.8
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002714
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003343
7985790 - 7991726
5937