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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8001533_8001633_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8001533 - 8001633
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGCT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGGAT
U12 Branch Point Sequence:
ATGCTCCCAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
72.6
35.5
Major BPS
48.8
-0
1.5
47.7
45.7
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
27.3
-2.6
3.4
39.4
46
Minor BPS
42.7
-0.4
2
60.88
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018341
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024345
7999914 - 8002052
2139