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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8006355_8006681_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8006355 - 8006681
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
CTCTCTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
CCACACTTACCT
Flanking Amino Acid:
GTAANKTSAVDYISVDTDTV
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74
36.6
Major BPS
61.4
0.28
1
53
33.7
Major PPT
75.3
0.57
0.9
71
33.3
Minor 5ss
41.7
-0.9
2.5
45.5
42.9
Minor BPS
48.6
-0
1.9
63.1
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000857
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001125
8005891 - 8015218
9328