Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8006764_8007001_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8006764 - 8007001

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACTG

5'SS Class:

strong_major

3'SS Sequence:

AACGTGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

AACTCTTCAACG

Flanking Amino Acid:

RMDWKKAAEEAQIRAGLKKQ

Intron Amino Acid Position:

457

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

71.5

40.2

Major BPS

78.2

0.7

79.9

32.6

Major PPT

66.4

0.37

62.2

43.5

Minor 5ss

30.1

-2.3

3.1

38.3

46.6

Minor BPS

57.9

0.11

1.6

59.18

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001125

8005891 - 8015218

9328