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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8009208_8009678_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8009208 - 8009678
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGATACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCTCCTGATAC
Flanking Amino Acid:
IYELSSAAYMVPLGFSVAAS
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
68.4
0.42
1
65.7
39.1
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
49.4
-0
1.8
61.57
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000857
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001125
8005891 - 8015218
9328