Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8010082_8010399_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8010082 - 8010399

Intron Length:

318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTGTTT

5'SS Class:

major

3'SS Sequence:

TCCTACCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATACAC

U12 Branch Point Sequence:

TCACTCCTACCT

Flanking Amino Acid:

WKKIHVETWGGWTRDCLLDW

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

72.5

39.4

Major BPS

56.2

0.16

64.7

Major PPT

79.5

0.66

0.8

31.5

Minor 5ss

41.7

-0.9

3.6

64.7

46.6

Minor BPS

47.6

-0.1

1.9

66.51

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001125

8005891 - 8015218

9328