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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8010498_8010731_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8010498 - 8010731
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTGTTTGTAATC
Flanking Amino Acid:
FFLYALKLGIVGSAWANTVS
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
69.1
41.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
38.3
-1.3
3.3
50
46.2
Minor BPS
49.7
-0
2
61.68
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000857
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001125
8005891 - 8015218
9328