Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8010830_8011230_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8010830 - 8011230

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTGT

5'SS Class:

major

3'SS Sequence:

CCTTGGCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAAAA

U12 Branch Point Sequence:

AACTCCAAAATC

Flanking Amino Acid:

QLQTRYLLSQAIILPQVVTG

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

41.4

Major BPS

55.5

0.14

61.5

32.5

Major PPT

75.3

0.57

0.9

64.9

41.3

Minor 5ss

44.6

-0.6

3.1

65.1

46.2

Minor BPS

48.4

-0.1

1.9

58.74

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001125

8005891 - 8015218

9328