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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8011276_8012005_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8011276 - 8012005
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CTGACTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GAATCCTGACTT
Flanking Amino Acid:
YVMIFIPALPAAFLYQLQTR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
78.5
0.64
0.9
71.8
38
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
52.6
0.16
1.7
68.1
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000857
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001125
8005891 - 8015218
9328