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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8013677_8015119_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8013677 - 8015119
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGAGAC
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCACCTCACCA
Flanking Amino Acid:
RELARLAGPVFVAQLLGFLI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.3
31.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.3
0.46
0.7
62.4
28.7
Minor 5ss
25.4
-2.8
3.2
29.4
37.4
Minor BPS
48.6
-0.1
1.9
60
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000857
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001125
8005891 - 8015218
9328