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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_805720_805802_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
805720 - 805802
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGAC
5'SS Class:
major
3'SS Sequence:
CCCATCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CGCGCGGTAACG
Flanking Amino Acid:
HSQGQGLARELQRRGFGCLH
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.6
38
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
68
0.41
0.8
61.2
29
Minor 5ss
28.4
-2.5
3.7
40.2
46.2
Minor BPS
39.1
-0.9
2.6
42.9
48.4

Associated Gene:

Gene:
METTL27
Ensembl Gene ID:
ENSAPLG00000028295
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024865
800507 - 809233
8727