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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8098240_8099332_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8098240 - 8099332
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AACCTACTAACT
Flanking Amino Acid:
YINTLFPTEQSLANIDEVVN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.9
73.4
36.7
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
46.4
-0.1
1.9
63.03
40.4

Associated Gene:

Gene:
VPS53
Ensembl Gene ID:
ENSAPLG00000007767
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008168
8096741 - 8157683
60943