About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8099383_8100168_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8099383 - 8100168
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ACATTATAAATT
Flanking Amino Acid:
EVVNKIRLKIRRLDDNIRTV
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
47.9
-0
1.9
63.57
41.1

Associated Gene:

Gene:
VPS53
Ensembl Gene ID:
ENSAPLG00000007767
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008168
8096741 - 8157683
60943