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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8121079_8122435_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8121079 - 8122435
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTAACCTTAAAT
Flanking Amino Acid:
EEAFPSQGTKRPGGPSNVLR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
79.5
0.66
0.9
81.3
36.3
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
76
0.9
1.4
87.63
36.8

Associated Gene:

Gene:
VPS53
Ensembl Gene ID:
ENSAPLG00000007767
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008168
8096741 - 8157683
60943