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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8134093_8135570_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8134093 - 8135570
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TACTCCTGAAAG
Flanking Amino Acid:
AWKILSGNLPKTTSSSSGLT
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
91.4
0.93
0.6
84.6
30.4
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
60
0.17
1.7
63.18
44

Associated Gene:

Gene:
VPS53
Ensembl Gene ID:
ENSAPLG00000007767
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008168
8096741 - 8157683
60943