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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8136718_8140144_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8136718 - 8140144
Intron Length:
3427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
NLTGETDTFSIVISNSIQLL
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.4
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
49
-0.1
2.3
63.3
41.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
VPS53
Ensembl Gene ID:
ENSAPLG00000007767
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008168
8096741 - 8157683
60943