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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8162564_8163479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8162564 - 8163479
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTTTGTATTT
Flanking Amino Acid:
EPEPPAPPAANSVFSPSPVL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.9
0.81
0.8
80.7
36.7
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
48.4
-0
2.1
72.97
39.1

Associated Gene:

Gene:
RFLNB
Ensembl Gene ID:
ENSAPLG00000008340
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008653
8162126 - 8165160
3035