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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8163590_8164829_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8163590 - 8164829
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCTCGCTCACGT
Flanking Amino Acid:
EFDPLPPKEIRYTSSVKYDS
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
76.6
0.6
0.9
72.6
37.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
38.8
-0.7
2.2
53.98
47.1

Associated Gene:

Gene:
RFLNB
Ensembl Gene ID:
ENSAPLG00000008340
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008653
8162126 - 8165160
3035