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Intron Name: Anas_platyrhynchos_platyrhynchos_20_8178343_8178586_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

8178343 - 8178586

Intron Length:

244

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGGACAT

U12 Branch Point Sequence:

CTGTGTAGGACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.9

76.3

30.6

Major BPS

47.5

-0.1

1.3

52.5

43.3

Major PPT

88.4

0.86

0.7

84.9

29.9

Minor 5ss

23.7

-3

3.6

30.8

43.1

Minor BPS

40.9

-0.7

51.24

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048480

8178265 - 8210188

31924