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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8178747_8182887_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8178747 - 8182887
Intron Length:
4141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTGCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TGCTTCTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
85.6
0.8
0.8
80.1
32
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
50.4
-0.1
1.8
56.62
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019474
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048480
8178265 - 8210188
31924