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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8182996_8184125_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8182996 - 8184125
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CCTTTCACAACT
Flanking Amino Acid:
PNDRQLALRAKLQTGWSVHT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
73.7
0.53
0.7
68.2
25.4
Minor 5ss
35
-1.7
3.1
44.9
36.9
Minor BPS
52.8
0.16
1.9
72.51
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019474
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048480
8178265 - 8210188
31924