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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8186419_8190169_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8186419 - 8190169
Intron Length:
3751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACACCA
Flanking Amino Acid:
TSVFCQDCKKKVCTKCGIET
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.8
0.71
0.8
79.5
32.5
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
40.6
-0.7
1.9
49.31
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019474
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048480
8178265 - 8210188
31924