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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8204241_8210153_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8204241 - 8210153
Intron Length:
5913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACACAAAA
Flanking Amino Acid:
HNSDVGSRVPGKRYVHTRTR
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.3
0.53
1
74.2
34.3
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
46
-0.3
2
65.37
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019474
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048480
8178265 - 8210188
31924