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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8233811_8237041_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8233811 - 8237041
Intron Length:
3231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCTGCTCTGATT
Flanking Amino Acid:
GKLPKLDYRKGLKPMDHNGL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
79
0.72
1
69
38.9
Major PPT
81.9
0.72
0.7
73.2
31.7
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
48
-0
1.7
63.75
41.4

Associated Gene:

Gene:
DOC2B
Ensembl Gene ID:
ENSAPLG00000026482
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023028
8232829 - 8244385
11557