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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8237117_8238326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8237117 - 8238326
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCCTCTCACCA
Flanking Amino Acid:
KLHLLPGASKANKLRTKTLR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
65.9
40.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
85.8
0.8
0.8
77.4
36.9
Minor 5ss
26.9
-2.7
2.9
33.5
41.8
Minor BPS
47
-0.2
1.8
56.1
43.3

Associated Gene:

Gene:
DOC2B
Ensembl Gene ID:
ENSAPLG00000026482
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023028
8232829 - 8244385
11557