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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8244050_8244248_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8244050 - 8244248
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GCCCACCCACCT
Flanking Amino Acid:
YDIGKSNDFIGGVVLGINAK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
66.3
0.37
1
64.2
37
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
36.6
-0.9
2
48.26
43.8

Associated Gene:

Gene:
DOC2B
Ensembl Gene ID:
ENSAPLG00000026482
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023028
8232829 - 8244385
11557