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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8249761_8250222_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8249761 - 8250222
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCACACGTAACC
Flanking Amino Acid:
PIIYVFMNKQFQSCLLKMLC
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
65
0.37
1.3
76.1
38
Major PPT
72
0.49
0.9
64.7
36.4
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
45.2
-0.3
2.2
53.46
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008756
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009115
8248088 - 8250354
2267